Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904086.1_cds_XP_016454236.1_48284
CDS Infomation

[gene=LOC107778483] [db_xref=GeneID:107778483] [protein=protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like] [protein_id=XP_016454236.1] [location=join(875..908,992..1059,1317..1994,2294..2406,3227..3486,3864..3985,5705..5773,6191..6244,6396..6497,7744..7839)] [gbkey=CDS]
Sequence

ATGGCTTCTGTATTGTCTACTTCCTTGTATCAAGATAGAGGACTGAGGACTATGGTCTCT
ACTGATGGATTTGTTCCTAGCTTTTGCTGCCCATATCGAAAGACATTGTTTACAGGTACT
ATCCCTGTTTCGATATGGCAGTTCAAACTTGTCTCCAGCAGTCCATTCCAAAAGGCTCCT
TTAGCTCCTTGTATTAAGTGTGAGAATAAAGAAAAGGATCAGGCTTCTCAGGGCTCCTTT
GAGCAGGTTTCTGTTGAGCGTTACCCTTATCACAGTTATATGGACTCCACGTCTGGGCAG
CTTGAACCAGCGTCTGGAGCTCGTGCTAGTATTCCTGGGCAGGAGTACTGGCCAGAAGGC
ACAGCTAGTCGAGTTCGGGCCGCCAGGGCTCCTGAACCCACTGGTACTTCAACTGGAACC
CCATCTTATGGAAAAAACCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTGCCGCT
TCCAAGCCTTCAGAAATCAATATAATTTCTGATGATTCGGCAGAGAGTCCAGATAATTTA
CCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGAAGAA
GAGGAGCTGACAGGCTATGAGCTGGATAAAAGACTTGGACGGCCCCACCCTTTTATTGAT
CCAAAGACAAAGAAGAAAATAGAGAAGCCACTTACTAGTGAGGAACTATGGTGGAATTGG
AGAAAGCCTGAAAAAGAGCAATGGTCTAGGTGGCAGAGGCGGCGTCCTGATGTCGAAACG
GTGTTTCTTAAAGCTATGGCGGAGACAGGACAGGTAAAGCTCTATGGTGACCATCCTACG
TTGACAGAGACTGCACTCTACAGAGCAAGGAGACATCTATATAAGAAGGAAAGGCTACAG
GCTGAAAAAGAGAAACTGGAAAAGATTGGCCCTATTGCATACTACTCAGAGTGGGTCCAA
GCTTGGAAGAAAGACACTTCACGAGAAGCCATTCAAAAGCATTTTGAAGAGACTGGTGAA
GATGAGAACACTCAACTCATTGAAATGTTCTGCCATCAAACAGATCGTGAATACCGCATA
ATGATGGGAACTGATATCCGTATTCCTCGTGATCCATTGGCCATGAGAATGCGGGAGGAT
CAAATAAAACAAATTTGGGGTGGAGATCCAGTTTACCCAACCATTAATTACATTCAGGAT
CCAGATGAAGTGATTGATTACAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTG
GCCTATCTGAAAGAGCATGGCAAAATAATATCAAGAGAGGAGCTAGAGAAAATTCTGGCC
AAAGAGAAGACAGAAGAAATTGAGGTGGCGGAAATTGATGAAGCCATGGCACGAGCTGTT
GACATTGGTGAAAATGATGACGAAGAAGAAGGAAGTGATGCTGAAGTTGAGGAGGGGGAT
GAGAAAATTACCCGAAATTGGAGTGTTTTGAAAAGTAATCCTGAGCTTCGCAAATCAAAG
GAAAAACCCAAAAAGAAAGACATGTCTCTGGAAGAAGCTGTAGATGATTCTGAGAATTTA
ACGGACTTCCTCATGGACTTTGATGAGGATGAGTGA

Peptide Sequence

PEP ID

XP_016454236.1
PEP Infomation

PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like [Nicotiana tabacum]
Sequence

MASVLSTSLYQDRGLRTMVSTDGFVPSFCCPYRKTLFTGTIPVSIWQFKLVSSSPFQKAP
LAPCIKCENKEKDQASQGSFEQVSVERYPYHSYMDSTSGQLEPASGARASIPGQEYWPEG
TASRVRAARAPEPTGTSTGTPSYGKNPGSRRKKYKASAAASKPSEINIISDDSAESPDNL
PEEPKDLSSEYVIYQPEQEEEELTGYELDKRLGRPHPFIDPKTKKKIEKPLTSEELWWNW
RKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGDHPTLTETALYRARRHLYKKERLQ
AEKEKLEKIGPIAYYSEWVQAWKKDTSREAIQKHFEETGEDENTQLIEMFCHQTDREYRI
MMGTDIRIPRDPLAMRMREDQIKQIWGGDPVYPTINYIQDPDEVIDYRGPDFHEPTPNML
AYLKEHGKIISREELEKILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSDAEVEEGD
EKITRNWSVLKSNPELRKSKEKPKKKDMSLEEAVDDSENLTDFLMDFDEDE

Transcript Sequence

Gene sequence data has not been registered.